bpfind query
pdbid:
hydrogen bond distance cutoff: [default : 3.8]
pseudo angle cutoff: [default : 120]
E-value cutoff: [default : 1.8]
select desired chain identifier in PDB File: [default : all]
include HETATM entries in PDB
avoid identification of base pairs stabilized by C-H...O/N H-bonds
avoid identification of base pairs involvingsugar O2' atoms
avoid base pairing between residue no. i and i+1
avoid printing base pairing information w.r.t.the second strand. This is suitable for simple oligonucleotides
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