DFT optimized structure of model URA(h):URA(h) Trans basepair


Intra-basepair Parameters

Buckle(°)0.14
Open angle(°)0.0
Propeller (°)0.03
Stagger (Å)0.0
Shear (Å)2.28
Stretch (Å)3.31

Basepair Geometry

C1'-C1' Distance(Å)11.47
C6-C8 Distance (Å)6.63
Opening (°)180.0
Glycosidic angle- 1 (°)20.74
Glycosidic angle- 2 (°)20.79

Quantum Chemical interaction energy = -4.50 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.