DFT optimized structure of URA(W):URA(W) Cis basepair


Intra-basepair Parameters

Buckle(°)2.27
Open angle(°)-0.66
Propeller (°)-6.57
Stagger (Å)0.03
Shear (Å)2.55
Stretch (Å)2.85

Basepair Geometry

C1'-C1' Distance(Å)8.57
C6-C8 Distance (Å)8.62
Opening (°)1.20
Glycosidic angle- 1 (°)79.99
Glycosidic angle- 2 (°)45.29

Quantum Chemical interaction energy = -9.64 Kcal/mol

(Ref: Panigrahi et.al ,J. Biomol. Struc. Dyn.,2011, 3)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.