DFT optimized structure of model URA(W):URA(S) Cis basepair


Intra-basepair Parameters

Buckle(°)56.44
Open angle(°)-55.07
Propeller (°)4.58
Stagger (Å)-0.07
Shear (Å)-3.03
Stretch (Å)3.42

Basepair Geometry

C1'-C1' Distance(Å)7.16
C6-C8 Distance (Å)7.81
Opening (°)21.07
Glycosidic angle- 1 (°)93.79
Glycosidic angle- 2 (°)52.72

Quantum Chemical interaction energy = -5.35 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.