DFT optimized structure of model GUA(h):URA(w) Trans basepair


Intra-basepair Parameters

Buckle(°)-13.41
Open angle(°)-9.57
Propeller (°)4.63
Stagger (Å)0.2
Shear (Å)2.2
Stretch (Å)3.06

Basepair Geometry

C1'-C1' Distance(Å)9.71
C6-C8 Distance (Å)6.03
Opening (°)134.62
Glycosidic angle- 1 (°)30.96
Glycosidic angle- 2 (°)22.02

Quantum Chemical interaction energy = -6.81 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.