DFT optimized structure of model GUA(h):URA(w) Cis basepair


Intra-basepair Parameters

Buckle(°)-1.20
Open angle(°)21.44
Propeller (°)-2.2
Stagger (Å)0.03
Shear (Å)0.04
Stretch (Å)2.98

Basepair Geometry

C1'-C1' Distance(Å)7.72
C6-C8 Distance (Å)6.05
Opening (°)47.48
Glycosidic angle- 1 (°)60.59
Glycosidic angle- 2 (°)68.49

Quantum Chemical interaction energy = -5.88 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.