DFT optimized structure of model GUA(H):URA(W) Trans basepair


Intra-basepair Parameters

Buckle(°)-5.69
Open angle(°)-1.00
Propeller (°)0.85
Stagger (Å)0.11
Shear (Å)2.35
Stretch (Å)2.80

Basepair Geometry

C1'-C1' Distance(Å)12.06
C6-C8 Distance (Å)9.76
Opening (°)165.46
Glycosidic angle- 1 (°)18.84
Glycosidic angle- 2 (°)30.12

Quantum Chemical interaction energy = -14.36 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.