DFT optimized structure of GUA(W):URA(W) Cis basepair


Intra-basepair Parameters

Buckle(°)3.94
Open angle(°)4.11
Propeller (°)-1.30
Stagger (Å)-0.15
Shear (Å)-2.42
Stretch (Å)2.84

Basepair Geometry

C1'-C1' Distance(Å)10.30
C6-C8 Distance (Å)9.86
Opening (°)128.18
Glycosidic angle- 1 (°)31.31
Glycosidic angle- 2 (°)15.03

Quantum Chemical interaction energy = -14.68 Kcal/mol

(Ref: Roy et al., J.Phy.Chem.B, 2008,112,3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.