DFT optimized structure of model GUA(W):GUA(S) Trans basepair


Intra-basepair Parameters

Buckle(°)-77.04
Open angle(°)-23.57
Propeller (°)-9.02
Stagger (Å)-0.58
Shear (Å)1.56
Stretch (Å)4.02

Basepair Geometry

C1'-C1' Distance(Å)9.22
C6-C8 Distance (Å)9.54
Opening (°)108.13
Glycosidic angle- 1 (°)38.01
Glycosidic angle- 2 (°)87.05

Quantum Chemical interaction energy = -15.48 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.