DFT optimized structure of GUA(s):URA(s) Cis basepair


Intra-basepair Parameters

Buckle(°)22.17
Open angle(°)-14.18
Propeller (°)-23.49
Stagger (Å)-1.88
Shear (Å)-0.97
Stretch (Å)4.08

Basepair Geometry

C1'-C1' Distance(Å)5.55
C6-C8 Distance (Å)9.58
Opening (°)148.80
Glycosidic angle- 1 (°)131.10
Glycosidic angle- 2 (°)105.25

Quantum Chemical interaction energy = -6.66 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.