DFT optimized structure of model GUA(h):GUA(s) Cis basepair


Intra-basepair Parameters

Buckle(°)12.02
Open angle(°)28.07
Propeller (°)-2.29
Stagger (Å)0.22
Shear (Å)1.87
Stretch (Å)3.06

Basepair Geometry

C1'-C1' Distance(Å)5.12
C6-C8 Distance (Å)6.3
Opening (°)38.40
Glycosidic angle- 1 (°)84.69
Glycosidic angle- 2 (°)132.06

Quantum Chemical interaction energy = -7.64 Kcal/mol

(Ref: Panigrahi et.al , Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.