DFT optimized structure of model GUA(h):GUA(h) Trans base pair


Intra-basepair Parameters

Buckle(°)-0.13
Open angle(°)-0.01
Propeller (°)0.35
Stagger (Å)0.02
Shear (Å)-2.94
Stretch (Å)2.1

Basepair Geometry

C1'-C1' Distance(Å)8.16
C6-C8 Distance (Å)3.41
Opening (°)180.00
Glycosidic angle- 1(°)38.59
Glycosidic angle- 2(°)38.56

Quantum Chemical interaction energy = -5.60 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.