DFT optimized structure of model GUA(W):GUA(W) Trans basepair


Intra-basepair Parameters

Buckle(°)0.00
Open angle(°)0.00
Propeller (°)-0.08
Stagger (Å)0.00
Shear (Å)2.1
Stretch (Å)2.75

Basepair Geometry

C1'-C1' Distance(Å)13.34
C6-C8 Distance (Å)11.14
Opening (°)180.0
Glycosidic angle- 1(°)72.05
Glycosidic angle- 2(°)72.04

Quantum Chemical interaction energy = -21.77 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.