DFT optimized structure of model GUA(W):GUA(S) Trans basepair


Intra-basepair Parameters

Buckle(°)-50.71
Open angle(°)-105.44
Propeller (°)-89.95
Stagger (Å)3.34
Shear (Å)0.16
Stretch (Å)-0.99

Basepair Geometry

C1'-C1' Distance(Å)7.56
C6-C8 Distance (Å)8.07
Opening (°)16.51
Glycosidic angle- 1 (°)37.55
Glycosidic angle- 2 (°)99.05

Quantum Chemical interaction energy = -10.51 Kcal/mol

(Ref: Panigrahi et.al , Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.