DFT optimized structure of model GUA(S):GUA(S) Cis base pair


Intra-basepair Parameters

Buckle(°)4.86
Open angle(°)-5.21
Propeller (°)28.69
Stagger (Å)-0.42
Shear (Å)1.88
Stretch (Å)3.78

Basepair Geometry

C1'-C1' Distance(Å)4.59
C6-C8 Distance (Å)9.22
Opening (°)151.12
Glycosidic angle- 1 (°)111.4
Glycosidic angle- 2 (°)156.64

Quantum Chemical interaction energy = -7.29 Kcal/mol

(Ref: Panigrahi et. al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.