DFT optimized structure of GUA(H):GUA(W) Trans base pair


Intra-basepair Parameters

Buckle(°)10.26
Open angle(°)-9.91
Propeller (°)3.48
Stagger (Å)0.03
Shear (Å)0.17
Stretch (Å)2.75

Basepair Geometry

C1'-C1' Distance(Å)11.06
C6-C8 Distance (Å)7.4
Opening (°)138.97
Glycosidic angle- 1(°)35.97
Glycosidic angle- 2(°)25.9

Quantum Chemical interaction energy = -17.58 Kcal/mol

(Ref: Roy et al., J.Phy.Chem.B, 2008, 112, 3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.