DFT optimized structure of GUA(H):GUA(W) Cis basepair


Intra-basepair Parameters

Buckle(°)-49.98
Open angle(°)-15.60
Propeller (°)-41.41
Stagger (Å)0.08
Shear (Å)-2.44
Stretch (Å)2.98

Basepair Geometry

C1'-C1' Distance(Å)10.71
C6-C8 Distance (Å)8.67
Opening (°)107.65
Glycosidic angle- 1(°)38.71
Glycosidic angle- 2(°)58.18

Quantum Chemical interaction energy = -11.33 Kcal/mol

(Ref: Panigrahi et.al ,J. Biomol. Struc. Dyn.,2011, 3)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.