DFT optimized structure of model GUA(H):GUA(S) Trans basepair


Intra-basepair Parameters

Buckle(°)-92.38
Open angle(°)21.25
Propeller (°)22.41
Stagger (Å)0.05
Shear (Å)3.32
Stretch (Å)3.44

Basepair Geometry

C1'-C1' Distance(Å)9.04
C6-C8 Distance (Å)8.65
Opening (°)150.89
Glycosidic angle- 1 (°)33.01
Glycosidic angle- 2 (°)83.34

Quantum Chemical interaction energy = -8.73 Kcal/mol

(Ref: Panigrahi et.al , Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.