DFT optimized structure of GUA(W):CYT(W) Cis basepair


Intra-basepair Parameters

Buckle(°)-0.3
Open angle(°)-3.43
Propeller (°)2.21
Stagger (Å)0.12
Shear (Å)0.17
Stretch (Å)2.92

Basepair Geometry

C1'-C1' Distance(Å)10.77
C6-C8 Distance (Å)9.9
Opening (°)20.04
Glycosidic angle- 1 (°)52.96
Glycosidic angle- 2 (°)53.65

Quantum Chemical interaction energy = -26.51 Kcal/mol

(Ref: Roy et al., J.Phy.Chem.B, 112,3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.