DFT optimized structure of model GUA(W):CYT(S) Cis basepair


Intra-basepair Parameters

Buckle(°)49.37
Open angle(°)-56.64
Propeller (°)-81.88
Stagger (Å)-0.21
Shear (Å)0.99
Stretch (Å)3.45

Basepair Geometry

C1'-C1' Distance(Å)8.18
C6-C8 Distance (Å)8.70
Opening (°)24.12
Glycosidic angle- 1 (°)36.01
Glycosidic angle- 2 (°)118.43

Quantum Chemical interaction energy = -16.65 Kcal/mol

(Ref: Panigrahi et. al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.