DFT optimized structure of model GUA(S):CYT(S) Cis basepair


Intra-basepair Parameters

Buckle(°)-14.76
Open angle(°)19.56
Propeller (°)-26.22
Stagger (Å)-0.85
Shear (Å)-3.78
Stretch (Å)4.86

Basepair Geometry

C1'-C1' Distance(Å)5.54
C6-C8 Distance (Å)9.57
Opening (°)145.97
Glycosidic angle- 1 (°)105.23
Glycosidic angle- 2 (°)131.89

Quantum Chemical interaction energy = -8.58 Kcal/mol

(Ref: Panigrahi et. al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.