DFT optimized structure of GUA(S):CYT(+) Trans base pair


Intra-basepair Parameters

Buckle(°)-21.56
Open angle(°)21.55
Propeller (°)-42.67
Stagger (Å)-1.04
Shear (Å)-0.20
Stretch (Å)2.82

Basepair Geometry

C1'-C1' Distance(Å)7.28
C6-C8 Distance (Å)8.15
Opening (°)79.36
Glycosidic angle- 1 (°)28.13
Glycosidic angle- 2 (°)107.58

Quantum Chemical interaction energy =- 10.33 Kcal/mol

(Ref: Unpublished data))

Intra-basepair parameters and basepair geometry are calculated by NUPARM.