DFT optimized structure of model CYT(s):URA(h) Trans basepair


Intra-basepair Parameters

Buckle(°)-84.9
Open angle(°)30.67
Propeller (°)-2.09
Stagger (Å)0.1
Shear (Å)1.83
Stretch (Å)3.93

Basepair Geometry

C1'-C1' Distance(Å)7.51
C6-C8 Distance (Å)6.38
Opening (°)88.42
Glycosidic angle- 1 (°)73.17
Glycosidic angle- 2 (°)37.56

Quantum Chemical interaction energy = -7.82 Kcal/mol

(Ref: Panigrahi et.al ,J. Biomol. Struc. Dyn.,2011, 3)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.