DFT optimized structure of model CYT(h):URA(s) Trans basepair


Intra-basepair Parameters

Buckle(°)-67.45
Open angle(°)-44.44
Propeller (°)33.28
Stagger (Å)-0.36
Shear (Å)2.31
Stretch (Å)4.00

Basepair Geometry

C1'-C1' Distance(Å)7.93
C6-C8 Distance (Å)6.33
Opening (°)94.82
Glycosidic angle- 1 (°)35.34
Glycosidic angle- 2 (°)70.03

Quantum Chemical interaction energy = -4.60 Kcal.mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.