DFT optimized structure of model CYT(h):URA(s) Cis basepair


Intra-basepair Parameters

Buckle(°)-12.67
Open angle(°)-47.05
Propeller (°)0.33
Stagger (Å)-0.72
Shear (Å)1.62
Stretch (Å)4.6

Basepair Geometry

C1'-C1' Distance(Å)8.30
C6-C8 Distance (Å)7.97
Opening (°)25.08
Glycosidic angle- 1 (°)36.61
Glycosidic angle- 2 (°)117.77

Quantum Chemical interaction energy = -4.63 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.