DFT optimized structure of model CYT(S):URA(W) Cis basepair


Intra-basepair Parameters

Buckle(°)33.35
Open angle(°)-32.22
Propeller (°)-14.27
Stagger (Å)-0.84
Shear (Å)-3.68
Stretch (Å)3.11

Basepair Geometry

C1'-C1' Distance(Å)6.92
C6-C8 Distance (Å)8.74
Opening (°)55.57
Glycosidic angle- 1 (°)105.88
Glycosidic angle- 2 (°)62.76

Quantum Chemical interaction energy = -7.51 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.