DFT optimized structure of model CYT(h):CYT(s) Trans basepair


Intra-basepair Parameters

Buckle(°)-90.63
Open angle(°)57.96
Propeller (°)54.68
Stagger (Å)-1.85
Shear (Å)5.23
Stretch (Å)2.92

Basepair Geometry

C1'-C1' Distance(Å)7.67
C6-C8 Distance (Å)7.84
Opening (°)127.64
Glycosidic angle- 1 (°)38.60
Glycosidic angle- 2 (°)92.85

Quantum Chemical interaction energy = -8.64 Kcal/mol

(Ref: Panigrahi et al.,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.