DFT optimized structure of ADE(w):CYT(s) Trans basepair


Intra-basepair Parameters

Buckle(°)31.63
Open angle(°)-34.6
Propeller (°)2.77
Stagger (Å)-1.2
Shear (Å)0.79
Stretch (Å)3.66

Basepair Geometry

C1'-C1' Distance(Å)8.59
C6-C8 Distance (Å)10.16
Opening (°)110.22
Glycosidic angle- 1 (°)42.84
Glycosidic angle- 2 (°)106.55

Quantum Chemical interaction energy = -10.64 Kcal/mol

(Ref: Panigrahi et. al, J. Biomol Struct. Dyn.,29,3,2011)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.