DFT optimized structure of model ADE(s):URA(w) Trans basepair


Intra-basepair Parameters

Buckle(°)0.2
Open angle(°)3.79
Propeller (°)0.09
Stagger (Å)0.00
Shear (Å)-0.14
Stretch (Å)2.98

Basepair Geometry

C1'-C1' Distance(Å)7.96
C6-C8 Distance (Å)8.56
Opening (°)108.59
Glycosidic angle- 1 (°)93.24
Glycosidic angle- 2 (°)20.12

Quantum Chemical interaction energy = -7.28 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.