DFT optimized structure of ADE(s):URA(s) Cis basepair


Intra-basepair Parameters

Buckle(°)-66.12
Open angle(°)-34.22
Propeller (°)-15.71
Stagger (Å)-1.03
Shear (Å)0.70
Stretch (Å)4.14

Basepair Geometry

C1'-C1' Distance(Å)5.75
C6-C8 Distance (Å)8.93
Opening (°)113.74
Glycosidic angle- 1 (°)97.46
Glycosidic angle- 2 (°)122.16

Quantum Chemical interaction energy = -10.0 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.