DFT optimized structure of model ADE(h):URA(h) Cis basepair


Intra-basepair Parameters

Buckle(°)-0.24
Open angle(°)-11.08
Propeller (°)0.31
Stagger (Å)0.01
Shear (Å)-0.18
Stretch (Å)3.4

Basepair Geometry

C1'-C1' Distance(Å)9.73
C6-C8 Distance (Å)5.04
Opening (°)140.15
Glycosidic angle- 1 (°)41.91
Glycosidic angle- 2 (°)51.83

Quantum Chemical interaction energy = -6.09 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.