DFT optimized structure of ADE(H):URA(W) Cis basepair


Intra-basepair Parameters

Buckle(°)-0.98
Open angle(°)0.03
Propeller (°)0.35
Stagger (Å)0.00
Shear (Å)0.09
Stretch (Å)2.86

Basepair Geometry

C1'-C1' Distance(Å)10.69
C6-C8 Distance (Å)9.86
Opening (°)19.18
Glycosidic angle- 1 (°)53.57
Glycosidic angle- 2 (°)54.0

Quantum Chemical interaction energy = -14.43 Kcal/mol

(Ref: Roy et al., J.Phy.Chem.B, 2008,112,3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.