DFT optimized structure of ADE(H):URA(W) Trans basepair


Intra-basepair Parameters

Buckle(°)-0.24
Open angle(°)2.23
Propeller (°)-2.63
Stagger (Å)-0.01
Shear (Å)-0.13
Stretch (Å)2.79

Basepair Geometry

C1'-C1' Distance(Å)8.25
C6-C8 Distance (Å)6.16
Opening (°)63.00
Glycosidic angle- 1 (°)51.14
Glycosidic angle- 2 (°)62.99

Quantum Chemical interaction energy = -14.21 Kcal/mol

(Ref: Roy et al., J.Phy.Chem.B, 2008,112,3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.