DFT optimized structure of model ADE(H):URA(S) Cis basepair


Intra-basepair Parameters

Buckle(°)-61.73
Open angle(°)-27.18
Propeller (°)-27.85
Stagger (Å)-1.42
Shear (Å)0.52
Stretch (Å)4.19

Basepair Geometry

C1'-C1' Distance(Å)7.88
C6-C8 Distance (Å)7.02
Opening (°)13.80
Glycosidic angle- 1 (°)26.68
Glycosidic angle- 2 (°)107.0

Quantum Chemical interaction energy = -12.96 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.