DFT optimized structure of model ADE(w):GUA(w) Trans base pair


Intra-basepair Parameters

Buckle(°)14.99
Open angle(°)-11.74
Propeller (°)16.07
Stagger (Å)0.22
Shear (Å)-0.18
Stretch (Å)2.89

Basepair Geometry

C1'-C1' Distance(Å)12.90
C6-C8 Distance (Å)11.48
Opening (°)171.35
Glycosidic angle- 1(°)42.05
Glycosidic angle- 2(°)33.3

Quantum Chemical interaction energy =-7.94 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data )

Intra-basepair parameters and basepair geometry are calculated by NUPARM.