DFT optimized structure of model ADE(s):GUA(w) Cis base pair


Intra-basepair Parameters

Buckle(°)1.35
Open angle(°)-5.62
Propeller (°)30.25
Stagger (Å)0.18
Shear (Å)0.04
Stretch (Å)2.98

Basepair Geometry

C1'-C1' Distance(Å)8.46
C6-C8 Distance (Å)10.38
Opening (°)53.94
Glycosidic angle- 1(°)121.77
Glycosidic angle- 2(°)57.57

Quantum Chemical interaction energy = -5.41 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.