DFT optimized structure of ADE(s):GUA(s) Trans base pair


Intra-basepair Parameters

Buckle(°)1.52
Open angle(°)23.45
Propeller (°)-33.6
Stagger (Å)-0.90
Shear (Å)1.38
Stretch (Å)3.20

Basepair Geometry

C1'-C1' Distance(Å)7.85
C6-C8 Distance (Å)10.18
Opening (°)161.67
Glycosidic angle- 1 (°)69.7
Glycosidic angle- 2 (°)86.16

Quantum Chemical interaction energy = -5.71Kcal/mol

(Ref: Roy et al., J.Phy.Chem.B, 2008,112,3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.