DFT optimized structure of ADE(s):GUA(s) Cis base pair


Intra-basepair Parameters

Buckle(°)48.80
Open angle(°)-43.41
Propeller (°)-37.59
Stagger (Å)0.67
Shear (Å)2.36
Stretch (Å)2.98

Basepair Geometry

C1'-C1' Distance(Å)5.83
C6-C8 Distance (Å)9.09
Opening (°)105.25
Glycosidic angle- 1 (°)124.50
Glycosidic angle- 2 (°)89.69

Quantum Chemical interaction energy = -8.71 Kcal/mol

(Ref: Panigrahi et.al ,J. Biomol. Struc. Dyn.,2011, 3)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.