DFT optimized structure of model ADE(h):GUA(w) Trans base pair


Intra-basepair Parameters

Buckle(°)7.83
Open angle(°)-12.63
Propeller (°)10.49
Stagger (Å)0.27
Shear (Å)-0.03
Stretch (Å)2.85

Basepair Geometry

C1'-C1' Distance(Å)10.93
C6-C8 Distance (Å)7.33
Opening (°)143.51
Glycosidic angle- 1(°)39.31
Glycosidic angle- 2(°)25.31

Quantum Chemical interaction energy = -9.84 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.