DFT optimized structure of ADE(W):GUA(W) Cis base pair


Intra-basepair Parameters

Buckle(°)6.14
Open angle(°)-2.93
Propeller (°)-12.75
Stagger (Å)-0.21
Shear (Å)-0.01
Stretch (Å)2.94

Basepair Geometry

C1'-C1' Distance(Å)12.95
C6-C8 Distance (Å)11.23
Opening (°)39.67
Glycosidic angle- 1(°)44.2
Glycosidic angle- 2(°)45.82

Quantum Chemical interaction energy = -15.00 Kcal/mol

(Ref: Roy et al., J. Phy. Chem. B, 2008, 112, 3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.