DFT optimized structure of ADE(S):GUA(S) Cis base pair


Intra-basepair Parameters

Buckle(°)-15.40
Open angle(°)-8.22
Propeller (°)-53.8
Stagger (Å)-0.2
Shear (Å)-1.87
Stretch (Å)3.73

Basepair Geometry

C1'-C1' Distance(Å)5.45
C6-C8 Distance (Å)9.42
Opening (°)149.44
Glycosidic angle- 1 (°)101.94
Glycosidic angle- 2 (°)121.63

Quantum Chemical interaction energy = -7.78 Kcal/mol

(Ref: Panigrahi et.al ,J. Biomol. Struc. Dyn.,2011, 3)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.