DFT optimized structure of model ADE(H):GUA(W) Cis base pair


Intra-basepair Parameters

Buckle(°)-1.48
Open angle(°)-3.63
Propeller (°)-24.24
Stagger (Å)-0.28
Shear (Å)-0.27
Stretch (Å)2.88

Basepair Geometry

C1'-C1' Distance(Å)10.95
C6-C8 Distance (Å)8.15
Opening (°)88.41
Glycosidic angle- 1(°)38.77
Glycosidic angle- 2(°)52.04

Quantum Chemical interaction energy = -12.98 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.