DFT optimized structure of model ADE(S):GUA(W) Cis base pair


Intra-basepair Parameters

Buckle(°)-34.39
Open angle(°)-14.58
Propeller (°)10.06
Stagger (Å)-0.04
Shear (Å)0.13
Stretch (Å)3.2

Basepair Geometry

C1'-C1' Distance(Å)8.94
C6-C8 Distance (Å)10.5
Opening (°)46.29
Glycosidic angle- 1(°)112.15
Glycosidic angle- 2(°)56.07

Quantum Chemical interaction energy = -9.26 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.