Model structure ADE(s):CYT(s) Cis basepair


Intra-basepair Parameters

Buckle(°)-15.59
Open angle(°)-39.50
Propeller (°)-4.08
Stagger (Å)-0.97
Shear (Å)0.97
Stretch (Å)4.12

Basepair Geometry

C1'-C1' Distance(Å)5.63
C6-C8 Distance (Å)9.68
Opening (°)122.69
Glycosidic angle- 1 (°)100.67
Glycosidic angle- 2 (°)143.02

Quantum Chemical interaction energy = -3.77 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.