DFT optimized structure of ADE(s):CYT(h) Trans basepair


Intra-basepair Parameters

Buckle(°)6.76
Open angle(°)22.96
Propeller (°)-44.03
Stagger (Å)-0.50
Shear (Å)-0.58
Stretch (Å)3.45

Basepair Geometry

C1'-C1' Distance(Å)8.13
C6-C8 Distance (Å)7.92
Opening (°)59.45
Glycosidic angle- 1 (°)96.98
Glycosidic angle- 2 (°)32.90

Quantum Chemical interaction energy = -5.97 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.