DFT optimized structure of model ADE(h):CYT(w) Cis base pair
Intra-basepair Parameters
Buckle(°)
-11.27
Open angle(°)
22.62
Propeller (°)
-0.47
Stagger (Å)
-0.01
Shear (Å)
2.39
Stretch (Å)
2.60
Basepair Geometry
C1'-C1' Distance(Å)
7.61
C6-C8 Distance (Å)
5.87
Opening (°)
41.90
Glycosidic angle- 1 (°)
81.78
Glycosidic angle- 2 (°)
54.48
Quantum Chemical interaction energy = -8.75 Kcal/mol
(Ref: Panigrahi et. al, Unpublished data)
-basepair parameters and basepair geometry are calculated by
NUPARM
.