Model structure of ADE(S):CYT(W) Cis base pair


Intra-basepair Parameters

Buckle(°)34.64
Open angle(°)-25.56
Propeller (°)-39.70
Stagger (Å)-0.45
Shear (Å)2.40
Stretch (Å)3.50

Basepair Geometry

C1'-C1' Distance(Å)7.84
C6-C8 Distance (Å)8.98
Opening (°)55.99
Glycosidic angle- 1 (°)117.08
Glycosidic angle- 2 (°)36.71

Quantum Chemical interaction energy = -16.11 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.