DFT optimized structure of ADE(w):ADE(w) Cis basepair


Intra-basepair Parameters

Buckle(°)8.96
Open angle(°)14.47
Propeller (°)-0.22
Stagger (Å)0.09
Shear (Å)2.50
Stretch (Å)2.75

Basepair Geometry

C1'-C1' Distance(Å)12.72
C6-C8 Distance (Å)11.65
Opening (°) 24.90
Glycosidic angle- 1 (°)63.82
Glycosidic angle- 2 (°)40.98

Quantum Chemical interaction energy = -6.07 Kcal/mol

(Ref: Roy et.al. J. Phy. Chem.B, 2008, 112, 3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.