DFT optimized structure of model ADE(s):ADE(w) Cis basepair


Intra-basepair Parameters

Buckle(°) 2.48
Open angle(°)12.74
Propeller (°)-0.28
Stagger (Å)-0.01
Shear (Å)-2.65
Stretch (Å) 2.74

Basepair Geometry

C1'-C1' Distance(Å)8.39
C6-C8 Distance (Å)11.2
Opening (°)70.11
Glycosidic angle-1(°)118.31
Glycosidic angle-2(°)81.27

Quantum Chemical interaction energy = -4.38 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.