DFT optimized structure of model ADE(s):ADE(s) Trans basepair


Intra-basepair Parameters

Buckle(°)1.96
Open angle(°)0.02
Propeller (°)0.86
Stagger (Å)0.02
Shear (Å)2.13
Stretch (Å)3.08

Basepair Geometry

C1'-C1' Distance(Å)8.81
C6-C8 Distance (Å)10.72
Opening (°)180.0
Glycosidic angle- 1(°)72.05
Glycosidic angle- 2(°)72.04

Quantum Chemical interaction energy = -0.72 Kcal/mol

(Ref: Panigrahi et.al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.